IL_6FT6_106

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_106 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1223

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6FT6|1|1|C|3235
6FT6|1|1|U|3236
6FT6|1|1|U|3237
6FT6|1|1|G|3238
*
6FT6|1|1|C|3249
6FT6|1|1|U|3250
6FT6|1|1|U|3251
6FT6|1|1|G|3252

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L16-A