IL_6FT6_111

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6FT6|1|1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_111 not in the Motif Atlas

Homologous match to IL_5TBW_133

Geometric discrepancy: 0.1164

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6FT6|1|1|U|3332
6FT6|1|1|G|3333
6FT6|1|1|U|3334
6FT6|1|1|A|3335
6FT6|1|1|A|3336
6FT6|1|1|G|3337
*
6FT6|1|1|C|3367
6FT6|1|1|U|3368
6FT6|1|1|G|3369
6FT6|1|1|A|3370
6FT6|1|1|G|3371

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain u

Ribosome biogenesis protein RLP24