IL_6FT6_133

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_133 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.2104

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6FT6|1|1|U|2427
6FT6|1|1|U|2428
6FT6|1|1|G|2429
*
6FT6|1|1|C|2600
6FT6|1|1|A|2601
6FT6|1|1|G|2602

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain m

Nucleolar GTP-binding protein 2