IL_6FTG_007

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6FTG|1|u|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_007 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2165

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6FTG|1|u|C|118
6FTG|1|u|G|119
6FTG|1|u|A|120
6FTG|1|u|A|121
*
6FTG|1|u|U|152
6FTG|1|u|G|153

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain G

eL8

Chain N

Ribosomal protein L15

Chain h

eL29