3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
AU*ACAUGU
Length
8 nucleotides
Bulged bases
6FTG|1|u|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_008 not in the Motif Atlas
Homologous match to IL_5TBW_007
Geometric discrepancy: 0.1529
The information below is about IL_5TBW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_19724.3
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

6FTG|1|u|A|121
6FTG|1|u|U|122
*
6FTG|1|u|A|147
6FTG|1|u|C|148
6FTG|1|u|A|149
6FTG|1|u|U|150
6FTG|1|u|G|151
6FTG|1|u|U|152

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain G
eL8
Chain N
Ribosomal protein L15
Chain h
eL29
Chain w
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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