IL_6FTG_025

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

6FTG|1|u|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_025 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3846

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6FTG|1|u|G|488
6FTG|1|u|C|489
6FTG|1|u|C|490
*
6FTG|1|u|G|664
6FTG|1|u|C|665
6FTG|1|u|G|666
6FTG|1|u|A|667
6FTG|1|u|C|668

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein L4

Chain r

eL28