IL_6FTG_029

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GCCCGGC*GUC

Length

10 nucleotides

Bulged bases

6FTG|1|u|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_029 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3361

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6FTG|1|u|G|500
6FTG|1|u|C|501
6FTG|1|u|C|502
6FTG|1|u|C|503
6FTG|1|u|G|504
6FTG|1|u|G|505
6FTG|1|u|C|506
*
6FTG|1|u|G|652
6FTG|1|u|U|653
6FTG|1|u|C|654

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein L4

Chain Q

uL14

Chain a

uL15