IL_6FTG_050

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_050 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1315

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6FTG|1|u|C|1431
6FTG|1|u|G|1432
6FTG|1|u|A|1433
6FTG|1|u|G|1434
*
6FTG|1|u|C|1450
6FTG|1|u|G|1451
6FTG|1|u|A|1452
6FTG|1|u|G|1453

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain Q

uL14