IL_6FTG_053

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_053 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.1303

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FTG|1|u|C|1520
6FTG|1|u|C|1521
6FTG|1|u|G|1522
*
6FTG|1|u|C|1655
6FTG|1|u|U|1656
6FTG|1|u|G|1657

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein L4

Chain a

uL15