IL_6FTG_057

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_057 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.0881

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6FTG|1|u|G|1586
6FTG|1|u|G|1587
6FTG|1|u|U|1588
6FTG|1|u|C|1589
*
6FTG|1|u|G|1605
6FTG|1|u|U|1606
6FTG|1|u|C|1607

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain j

Ribosomal protein L37