IL_6FTG_064

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_064 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.1227

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6FTG|1|u|A|1737
6FTG|1|u|A|1738
*
6FTG|1|u|U|1790
6FTG|1|u|U|1791
6FTG|1|u|U|1792

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10 (Predicted)

Chain T

eL21

Chain v

5S ribosomal RNA; 5S rRNA