IL_6FTG_068

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

6FTG|1|u|U|1754, 6FTG|1|u|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_068 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2947

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6FTG|1|u|G|1753
6FTG|1|u|U|1754
6FTG|1|u|C|1755
6FTG|1|u|U|1756
*
6FTG|1|u|A|1775
6FTG|1|u|A|1776
6FTG|1|u|C|1777

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5