IL_6FTG_069

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_069 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3145

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6FTG|1|u|U|1756
6FTG|1|u|U|1757
6FTG|1|u|G|1758
*
6FTG|1|u|C|1774
6FTG|1|u|A|1775

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10 (Predicted)