IL_6FTG_071

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_071 not in the Motif Atlas

Homologous match to IL_5TBW_046

Geometric discrepancy: 0.1876

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FTG|1|u|A|1858
6FTG|1|u|C|1859
6FTG|1|u|U|1860
*
6FTG|1|u|A|1874
6FTG|1|u|C|1875
6FTG|1|u|U|1876

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain b

60S ribosomal protein L29

Chain v

5S ribosomal RNA; 5S rRNA