IL_6FTG_076

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6FTG|1|u|C|1921

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_076 not in the Motif Atlas

Homologous match to IL_8GLP_078

Geometric discrepancy: 0.1057

The information below is about IL_8GLP_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

6FTG|1|u|C|1920
6FTG|1|u|C|1921
6FTG|1|u|G|1922
*
6FTG|1|u|C|2062
6FTG|1|u|G|2063

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain M

Ribosomal protein L14

Chain O

uL13

Chain S

eL20

Chain f

eL33