IL_6FTG_079

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6FTG|1|u|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_079 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.3527

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6FTG|1|u|G|1946
6FTG|1|u|U|1947
6FTG|1|u|G|1948
*
6FTG|1|u|C|2035
6FTG|1|u|C|2036

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain S

eL20

Chain m

eL40

Chain v

5S ribosomal RNA; 5S rRNA