IL_6FTG_083

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

6FTG|1|u|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_083 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.3742

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6FTG|1|u|C|2083
6FTG|1|u|C|2084
6FTG|1|u|G|2085
*
6FTG|1|u|C|2272
6FTG|1|u|G|2273

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein L4

Chain F

uL30

Chain Q

uL14

Chain e

eL32