3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
ACG*CU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_091 not in the Motif Atlas
Geometric match to IL_4UYK_002
Geometric discrepancy: 0.262
The information below is about IL_4UYK_002
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_06586.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

6FTG|1|u|A|2477
6FTG|1|u|C|2478
6FTG|1|u|G|2479
*
6FTG|1|u|C|2499
6FTG|1|u|U|2500

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain X
uL23
Chain w
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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