IL_6FTG_091

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_091 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.262

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6FTG|1|u|A|2477
6FTG|1|u|C|2478
6FTG|1|u|G|2479
*
6FTG|1|u|C|2499
6FTG|1|u|U|2500

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain X

uL23

Chain w

5.8S ribosomal RNA; 5.8S rRNA