IL_6FTG_092

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_092 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2601

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6FTG|1|u|G|2542
6FTG|1|u|A|2543
6FTG|1|u|G|2544
6FTG|1|u|U|2545
6FTG|1|u|G|2546
6FTG|1|u|G|2547
*
6FTG|1|u|C|2772
6FTG|1|u|G|2773
6FTG|1|u|C|2774

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain k

eL38

Chain w

5.8S ribosomal RNA; 5.8S rRNA