IL_6FTG_100

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6FTG|1|u|G|2711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_100 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.5171

The information below is about IL_8GLP_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

6FTG|1|u|C|2704
6FTG|1|u|G|2705
*
6FTG|1|u|C|2710
6FTG|1|u|G|2711
6FTG|1|u|G|2712

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

eL22

Chain X

uL23

Chain x

Protein transport protein Sec61 subunit alpha isoform 1