IL_6FTG_123

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6FTG|1|u|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_123 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1354

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6FTG|1|u|U|3927
6FTG|1|u|A|3928
6FTG|1|u|G|3929
*
6FTG|1|u|U|4181
6FTG|1|u|G|4182
6FTG|1|u|G|4183
6FTG|1|u|G|4184

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain o

eL42