IL_6FTG_135

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_135 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1079

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6FTG|1|u|C|4412
6FTG|1|u|C|4413
6FTG|1|u|A|4414
6FTG|1|u|A|4415
6FTG|1|u|G|4416
*
6FTG|1|u|C|4426
6FTG|1|u|G|4427
6FTG|1|u|A|4428
6FTG|1|u|C|4429
6FTG|1|u|G|4430

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain m

eL40