IL_6FTG_153

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CGCGG*CCUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_153 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.2932

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6FTG|1|u|C|4739
6FTG|1|u|G|4740
6FTG|1|u|C|4741
6FTG|1|u|G|4742
6FTG|1|u|G|4743
*
6FTG|1|u|C|4957
6FTG|1|u|C|4958
6FTG|1|u|U|4959
6FTG|1|u|G|4960

Current chains

Chain u

28S ribosomal RNA

Nearby chains