IL_6FTI_006
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_006 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1588
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FTI|1|u|C|30
6FTI|1|u|U|31
6FTI|1|u|G|32
6FTI|1|u|A|33
6FTI|1|u|A|34
6FTI|1|u|U|35
6FTI|1|u|U|36
6FTI|1|u|U|37
*
6FTI|1|u|A|44
6FTI|1|u|U|45
6FTI|1|u|U|46
6FTI|1|u|A|47
6FTI|1|u|G|48
6FTI|1|u|U|49
6FTI|1|u|C|50
6FTI|1|u|A|51
6FTI|1|u|G|52
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain j
- Ribosomal protein L37
- Chain o
- eL42
Coloring options: