IL_6FTI_025

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_025 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3055

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6FTI|1|u|G|482
6FTI|1|u|G|483
6FTI|1|u|U|484
6FTI|1|u|C|485
6FTI|1|u|C|486
*
6FTI|1|u|G|670
6FTI|1|u|G|671
6FTI|1|u|C|672

Current chains

Chain u

28S rRNA

Nearby chains

Chain r

eL28