IL_6FTI_105

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6FTI|1|u|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_105 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0843

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6FTI|1|u|A|2850
6FTI|1|u|G|2851
6FTI|1|u|U|2852
6FTI|1|u|C|2853
6FTI|1|u|G|2854
6FTI|1|u|G|2855
*
6FTI|1|u|C|3837
6FTI|1|u|U|3838
6FTI|1|u|G|3839
6FTI|1|u|U|3840

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14