IL_6FTI_106

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6FTI|1|u|U|2880

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_106 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0865

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6FTI|1|u|C|2867
6FTI|1|u|G|2868
6FTI|1|u|U|2869
6FTI|1|u|A|2870
6FTI|1|u|A|2871
6FTI|1|u|C|2872
*
6FTI|1|u|G|2877
6FTI|1|u|G|2878
6FTI|1|u|A|2879
6FTI|1|u|U|2880
6FTI|1|u|A|2881
6FTI|1|u|A|2882
6FTI|1|u|G|2883

Current chains

Chain u

28S rRNA

Nearby chains

Chain n

60s ribosomal protein l41

Chain p

Ribosomal protein L37a