IL_6FTI_116
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_116 not in the Motif Atlas
- Homologous match to IL_5TBW_088
- Geometric discrepancy: 0.179
- The information below is about IL_5TBW_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FTI|1|u|U|3715
6FTI|1|u|C|3716
6FTI|1|u|A|3717
6FTI|1|u|A|3718
6FTI|1|u|A|3719
6FTI|1|u|G|3720
6FTI|1|u|U|3721
*
6FTI|1|u|A|3732
6FTI|1|u|A|3733
6FTI|1|u|U|3734
6FTI|1|u|G|3735
6FTI|1|u|A|3736
6FTI|1|u|A|3737
6FTI|1|u|G|3738
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain i
- 60S ribosomal protein L36
- Chain o
- eL42
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