IL_6FTI_131

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

6FTI|1|u|C|4349

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_131 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2926

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6FTI|1|u|G|4347
6FTI|1|u|A|4348
6FTI|1|u|C|4349
6FTI|1|u|C|4350
*
6FTI|1|u|G|4364
6FTI|1|u|C|4365

Current chains

Chain u

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

uL14

Chain a

uL15

Chain o

eL42