IL_6FTI_138

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6FTI|1|u|G|4522, 6FTI|1|u|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_138 not in the Motif Atlas

Homologous match to IL_5TBW_108

Geometric discrepancy: 0.085

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6FTI|1|u|C|4456
6FTI|1|u|U|4457
6FTI|1|u|C|4458
*
6FTI|1|u|G|4520
6FTI|1|u|U|4521
6FTI|1|u|G|4522
6FTI|1|u|A|4523
6FTI|1|u|G|4524

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14