IL_6FTI_153

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6FTI|1|u|A|4708

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_153 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.2336

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6FTI|1|u|A|4681
6FTI|1|u|U|4682
6FTI|1|u|U|4683
6FTI|1|u|A|4684
6FTI|1|u|U|4685
*
6FTI|1|u|A|4705
6FTI|1|u|G|4706
6FTI|1|u|A|4707
6FTI|1|u|A|4708
6FTI|1|u|U|4709

Current chains

Chain u

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40