IL_6FTI_168

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_168 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1136

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6FTI|1|u|A|5014
6FTI|1|u|G|5015
6FTI|1|u|A|5016
6FTI|1|u|G|5017
*
6FTI|1|u|C|5032
6FTI|1|u|G|5033
6FTI|1|u|A|5034
6FTI|1|u|U|5035

Current chains

Chain u

28S rRNA

Nearby chains

Chain R

eL19