IL_6FTJ_029
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCCCGGC*GUC
- Length
- 10 nucleotides
- Bulged bases
- 6FTJ|1|u|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_029 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3361
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6FTJ|1|u|G|500
6FTJ|1|u|C|501
6FTJ|1|u|C|502
6FTJ|1|u|C|503
6FTJ|1|u|G|504
6FTJ|1|u|G|505
6FTJ|1|u|C|506
*
6FTJ|1|u|G|652
6FTJ|1|u|U|653
6FTJ|1|u|C|654
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain Q
- uL14
- Chain a
- uL15
Coloring options: