IL_6FTJ_056

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_056 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1304

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6FTJ|1|u|C|1551
6FTJ|1|u|G|1552
6FTJ|1|u|A|1553
6FTJ|1|u|A|1554
6FTJ|1|u|G|1555
*
6FTJ|1|u|U|1572
6FTJ|1|u|G|1573
6FTJ|1|u|G|1574
6FTJ|1|u|A|1575
6FTJ|1|u|G|1576

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

Ribosomal protein L37a