IL_6FTJ_078
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6FTJ|1|u|C|1935, 6FTJ|1|u|A|2041
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_078 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1372
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6FTJ|1|u|G|1933
6FTJ|1|u|A|1934
6FTJ|1|u|C|1935
6FTJ|1|u|C|1936
6FTJ|1|u|C|1937
6FTJ|1|u|C|1938
6FTJ|1|u|A|1939
6FTJ|1|u|G|1940
6FTJ|1|u|A|1941
6FTJ|1|u|A|1942
6FTJ|1|u|A|1943
6FTJ|1|u|A|1944
*
6FTJ|1|u|U|2038
6FTJ|1|u|G|2039
6FTJ|1|u|A|2040
6FTJ|1|u|A|2041
6FTJ|1|u|A|2042
6FTJ|1|u|A|2043
6FTJ|1|u|U|2044
6FTJ|1|u|G|2045
6FTJ|1|u|G|2046
6FTJ|1|u|A|2047
6FTJ|1|u|U|2048
6FTJ|1|u|G|2049
6FTJ|1|u|G|2050
6FTJ|1|u|C|2051
6FTJ|1|u|G|2052
6FTJ|1|u|C|2053
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain F
- Ul30
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain O
- uL13
- Chain S
- eL20
- Chain f
- eL33
- Chain m
- eL40
- Chain v
- 5S ribosomal RNA; 5S rRNA
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