IL_6FTJ_080
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6FTJ|1|u|A|1960
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_080 not in the Motif Atlas
- Homologous match to IL_8P9A_282
- Geometric discrepancy: 0.3978
- The information below is about IL_8P9A_282
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6FTJ|1|u|U|1957
6FTJ|1|u|A|1958
6FTJ|1|u|U|1959
6FTJ|1|u|A|1960
6FTJ|1|u|G|1961
6FTJ|1|u|A|1962
6FTJ|1|u|C|1963
6FTJ|1|u|A|1964
6FTJ|1|u|G|1965
*
6FTJ|1|u|C|2022
6FTJ|1|u|C|2023
6FTJ|1|u|G|2024
6FTJ|1|u|A|2025
6FTJ|1|u|A|2026
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain m
- eL40
- Chain s
- 60S acidic ribosomal protein P0
Coloring options: