IL_6FTJ_090
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6FTJ|1|u|A|2512, 6FTJ|1|u|A|2513
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_090 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0946
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6FTJ|1|u|C|2446
6FTJ|1|u|U|2447
6FTJ|1|u|G|2448
6FTJ|1|u|A|2449
6FTJ|1|u|G|2450
*
6FTJ|1|u|C|2509
6FTJ|1|u|G|2510
6FTJ|1|u|A|2511
6FTJ|1|u|A|2512
6FTJ|1|u|A|2513
6FTJ|1|u|G|2514
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain g
- eL34
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
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