IL_6FTJ_093

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_093 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1753

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6FTJ|1|u|C|2589
6FTJ|1|u|G|2590
6FTJ|1|u|A|2591
6FTJ|1|u|U|2592
6FTJ|1|u|C|2593
*
6FTJ|1|u|G|2752
6FTJ|1|u|G|2753
6FTJ|1|u|G|2754
6FTJ|1|u|A|2755
6FTJ|1|u|G|2756

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2

Chain Z

60S ribosomal protein L27

Chain g

eL34