IL_6FTJ_104

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6FTJ|1|u|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_104 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0857

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6FTJ|1|u|A|2850
6FTJ|1|u|G|2851
6FTJ|1|u|U|2852
6FTJ|1|u|C|2853
6FTJ|1|u|G|2854
6FTJ|1|u|G|2855
*
6FTJ|1|u|C|3837
6FTJ|1|u|U|3838
6FTJ|1|u|G|3839
6FTJ|1|u|U|3840

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14