IL_6FTJ_118

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6FTJ|1|u|A|3785, 6FTJ|1|u|C|3791, 6FTJ|1|u|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_118 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1186

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6FTJ|1|u|C|3781
6FTJ|1|u|C|3782
6FTJ|1|u|A|3783
6FTJ|1|u|A|3784
6FTJ|1|u|A|3785
6FTJ|1|u|U|3786
6FTJ|1|u|G|3787
6FTJ|1|u|C|3788
6FTJ|1|u|C|3789
6FTJ|1|u|U|3790
6FTJ|1|u|C|3791
6FTJ|1|u|G|3792
*
6FTJ|1|u|C|3808
6FTJ|1|u|G|3809
6FTJ|1|u|C|3810
6FTJ|1|u|G|3811

Current chains

Chain u

28S rRNA

Nearby chains

Chain n

60s ribosomal protein l41