IL_6FTJ_144

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUGC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_144 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3093

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6FTJ|1|u|U|4579
6FTJ|1|u|U|4580
6FTJ|1|u|G|4581
6FTJ|1|u|C|4582
*
6FTJ|1|u|G|4721
6FTJ|1|u|G|4722
6FTJ|1|u|A|4723
6FTJ|1|u|A|4724

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13