IL_6FTJ_149

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6FTJ|1|u|U|4634, 6FTJ|1|u|U|4636

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_149 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2423

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6FTJ|1|u|U|4632
6FTJ|1|u|G|4633
6FTJ|1|u|U|4634
6FTJ|1|u|A|4635
6FTJ|1|u|U|4636
6FTJ|1|u|G|4637
*
6FTJ|1|u|C|4662
6FTJ|1|u|G|4663
6FTJ|1|u|A|4664
6FTJ|1|u|A|4665
6FTJ|1|u|G|4666

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain W

Ribosomal protein L24

Chain d

eL31