IL_6FTJ_153

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGCGG*CCUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_153 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.2932

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6FTJ|1|u|C|4739
6FTJ|1|u|G|4740
6FTJ|1|u|C|4741
6FTJ|1|u|G|4742
6FTJ|1|u|G|4743
*
6FTJ|1|u|C|4957
6FTJ|1|u|C|4958
6FTJ|1|u|U|4959
6FTJ|1|u|G|4960

Current chains

Chain u

28S rRNA

Nearby chains