Motif IL_61988.2 Version IL_61988.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_123 | 4WF9 | 0.5676 | 1 | Partly complementary | X | LSU rRNA | U | 1757 | A | 1758 | G | 1759 | G | 1760 | G | 1761 | * | C | 1768 | C | 1769 | A | 1771 | G | 1772 | ncWW | cWW | ||
| 2 | IL_4DB2_001 | 4DB2 | 0.0000 | 0 | H+G | RNA (14-mer) | G | 6 | G | 7 | C | 8 | C | 9 | C | 10 | * | G | 5 | G | 6 | G | 7 | C | 8 | cWW | ncWH | cWW | ||
| 3 | IL_4PHY_006 | 4PHY | 0.7143 | 2 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | C | 22 | * | G | 30 | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGGG*CCCAG | 1 |
| GGCCC*GGGC | 1 |
| GAUCAC*GGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGG*CCA | 1 |
| GCC*GG | 1 |
| AUCA*GAA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Partly complementary (1)
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.57 | Avg 0.47 | Max 0.82
Coloring options: