IL_6FTJ_154

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_154 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2853

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6FTJ|1|u|G|4743
6FTJ|1|u|A|4744
6FTJ|1|u|G|4745
6FTJ|1|u|C|4746
*
6FTJ|1|u|G|4954
6FTJ|1|u|A|4955
6FTJ|1|u|A|4956
6FTJ|1|u|C|4957

Current chains

Chain u

28S rRNA

Nearby chains

Chain f

eL33