IL_6FTJ_172
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_172 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2983
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6FTJ|1|v|G|71
6FTJ|1|v|U|72
6FTJ|1|v|U|73
6FTJ|1|v|A|74
6FTJ|1|v|G|75
6FTJ|1|v|U|76
6FTJ|1|v|A|77
6FTJ|1|v|C|78
*
6FTJ|1|v|G|98
6FTJ|1|v|G|99
6FTJ|1|v|A|100
6FTJ|1|v|A|101
6FTJ|1|v|U|102
6FTJ|1|v|A|103
6FTJ|1|v|C|104
Current chains
- Chain v
- 5S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain F
- Ul30
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain S
- eL20
- Chain T
- eL21
- Chain u
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: