IL_6FTJ_188

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUCC*GUC

Length

7 nucleotides

Bulged bases

6FTJ|1|u|C|4771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_188 not in the Motif Atlas

Geometric match to IL_8VTW_096

Geometric discrepancy: 0.2246

The information below is about IL_8VTW_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6FTJ|1|u|G|4769
6FTJ|1|u|U|4770
6FTJ|1|u|C|4771
6FTJ|1|u|C|4772
*
6FTJ|1|u|G|4863
6FTJ|1|u|U|4864
6FTJ|1|u|C|4865

Current chains

Chain u

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13