IL_6FXC_032

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

ACGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_032 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5669

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6FXC|1|AA|A|920
6FXC|1|AA|C|921
6FXC|1|AA|G|922
6FXC|1|AA|A|923
6FXC|1|AA|G|924
*
6FXC|1|AA|C|943
6FXC|1|AA|G|944
6FXC|1|AA|A|945
6FXC|1|AA|A|946
6FXC|1|AA|U|947

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16