IL_6FXC_036

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

6FXC|1|AA|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_036 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.1017

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6FXC|1|AA|A|1055
6FXC|1|AA|U|1056
6FXC|1|AA|A|1057
*
6FXC|1|AA|U|1193
6FXC|1|AA|U|1194

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L13

Chain AO

50S ribosomal protein L20