IL_6FXC_045

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_045 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.0815

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6FXC|1|AA|G|1300
6FXC|1|AA|U|1301
6FXC|1|AA|G|1302
6FXC|1|AA|A|1303
6FXC|1|AA|G|1304
6FXC|1|AA|U|1305
6FXC|1|AA|A|1306
6FXC|1|AA|G|1307
*
6FXC|1|AA|U|2038
6FXC|1|AA|G|2039
6FXC|1|AA|A|2040
6FXC|1|AA|A|2041
6FXC|1|AA|A|2042
6FXC|1|AA|U|2043
6FXC|1|AA|C|2044

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32